miRBase entry: der-mir-311c

Stem-loop der-mir-311c

Accession

MI0009062

Description

Drosophila erecta der-mir-311c precursor miRNA

Sequence

uagauaguuuuuCGGACGGUAUCUGCGUCAAUAUUuccuuguuagaauaUAUUGCACAUUCACCAGCCUGAaaauaucaa
..((((.(((((.((..(((...((.(.(((((((((.......))).))))))).))...)))..)).)))))))))..

Structure

ua    g     C  AC   AUC  C U      -   cu 
  gaua uuuuu GG  GGU   UG G CAAUAU Uuc  u
  |||| ||||| ||  |||   || | |||||| |||  g
  cuau aaaAG CC  CCA   AC C GUUAUa aag  u
aa    -     U  GA   CUU  A -      u   au

Annotation confidence Not enough data

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Genome context

scaffold_4845: 10618008-10618087 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from der-mir-311c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-311c-3p

Accession	MIMAT0008522
Description	Drosophila erecta der-miR-311c-3p mature miRNA
Sequence	50 - UAUUGCACAUUCACCAGCCUGA - 71
Evidence	experimental Illumina [2]

Mature der-miR-311c-5p

Accession	MIMAT0037339
Description	Drosophila erecta der-miR-311c-5p mature miRNA
Sequence	13 - CGGACGGUAUCUGCGUCAAUAUU - 35
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250