Stem-loop dvi-mir-9541a

Accession

MI0030968

Description

Drosophila virilis dvi-mir-9541a precursor miRNA

Sequence

UAGCAUAGUAGAUCUCUUAACCgagcauaaaaagaaaaccgGUUUAGGAGAACUACUGUGCUUa
.((((((((((.(((((((((((................))).)))))))).))))))))))..

Structure

-U          A        -   agcauaa 
  AGCAUAGUAG UCUCUUAA CCg       a
  |||||||||| |||||||| |||        
  UCGUGUCAUC AGAGGAUU Ggc       a
aU          A        U   caaaaga 

Annotation confidence Low

Genome context

scaffold_12970: 9428406-9428469 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9541a

Mature dvi-miR-9541a-5p

• Accession: MIMAT0039285
• Description: Drosophila virilis dvi-miR-9541a-5p mature miRNA
• Sequence: 1 - UAGCAUAGUAGAUCUCUUAACC - 22
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9541a-3p

• Accession: MIMAT0039286
• Description: Drosophila virilis dvi-miR-9541a-3p mature miRNA
• Sequence: 42 - GUUUAGGAGAACUACUGUGCUU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250