miRBase entry: dvi-mir-9542c

Stem-loop dvi-mir-9542c

Accession

MI0030979

Description

Drosophila virilis dvi-mir-9542c precursor miRNA

Sequence

ACUGGCGCUUUAUAAUCGAAGAgugauuuuuauaugcucUUUGAUUGUAAAGGGCUAUAGcg
..((((.(((((((((((((((((.((......))))))))))))))))))).)))).....

Structure

---AC    G                 g  uu 
     UGGC CUUUAUAAUCGAAGAgu au  u
     |||| ||||||||||||||||| ||   
     AUCG GAAAUGUUAGUUUcucg ua  u
gcGAU    G                 -  ua

Annotation confidence Not enough data

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Genome context

scaffold_12970: 9416655-9416716 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dvi-mir-9542c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9542c-5p

Accession	MIMAT0039303
Description	Drosophila virilis dvi-miR-9542c-5p mature miRNA
Sequence	1 - ACUGGCGCUUUAUAAUCGAAGA - 22
Evidence	experimental Illumina [1]

Mature dvi-miR-9542c-3p

Accession	MIMAT0039304
Description	Drosophila virilis dvi-miR-9542c-3p mature miRNA
Sequence	40 - UUUGAUUGUAAAGGGCUAUAG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250