Stem-loop dvi-mir-9542c

Accession

MI0030979

Description

Drosophila virilis dvi-mir-9542c precursor miRNA

Sequence

ACUGGCGCUUUAUAAUCGAAGAgugauuuuuauaugcucUUUGAUUGUAAAGGGCUAUAGcg
..((((.(((((((((((((((((.((......))))))))))))))))))).)))).....

Structure

---AC    G                 g  uu 
     UGGC CUUUAUAAUCGAAGAgu au  u
     |||| ||||||||||||||||| ||   
     AUCG GAAAUGUUAGUUUcucg ua  u
gcGAU    G                 -  ua 

Annotation confidence Low

Genome context

scaffold_12970: 9416655-9416716 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dvi-mir-9542c

Mature dvi-miR-9542c-5p

• Accession: MIMAT0039303
• Description: Drosophila virilis dvi-miR-9542c-5p mature miRNA
• Sequence: 1 - ACUGGCGCUUUAUAAUCGAAGA - 22
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9542c-3p

• Accession: MIMAT0039304
• Description: Drosophila virilis dvi-miR-9542c-3p mature miRNA
• Sequence: 40 - UUUGAUUGUAAAGGGCUAUAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250