Stem-loop dse-mir-2498b

Accession

MI0030863

Description

Drosophila sechellia dse-mir-2498b precursor miRNA

Sequence

1456 reads, 458.0 reads per million, 1 experiments

AAAAAGUCUGUUAUGCUAAUGUuguguguuuaacaaaCUUGGCACAACCGCUUUUUAUU
(((((((..(((.((((((.(((.(((.....)))))))))))).))).)))))))...

Structure

---       CU   A      U   g   g 
   AAAAAGU  GUU UGCUAA GUu ugu u
   |||||||  ||| |||||| ||| ||| u
   UUUUUCG  CAA ACGGUU Caa aca u
UUA       -C   C      -   -   a 

Annotation confidence High

Genome context

scaffold_1: 14026439-14026497 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-2498b

Mature dse-miR-2498b-5p

• Accession: MIMAT0039124
• Description: Drosophila sechellia dse-miR-2498b-5p mature miRNA
• Sequence: 1 - AAAAAGUCUGUUAUGCUAAUGU - 22
• Evidence: experimental ; Illumina [1]

Mature dse-miR-2498b-3p

• Accession: MIMAT0039125
• Description: Drosophila sechellia dse-miR-2498b-3p mature miRNA
• Sequence: 38 - CUUGGCACAACCGCUUUUUAUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250