Stem-loop der-mir-9680

Accession

MI0030932

Description

Drosophila erecta der-mir-9680 precursor miRNA

Sequence

1636 reads, 24.0 reads per million, 11 experiments

AAAUCUCUUCAAGCCGAAGGUCUauguaaguuugguuggAAUUCUGUGAGAAGAGAUUUCU
((((((((((..((.(((..((((............)))).))).))..))))))))))..

Structure

--          AA  C   GG    uguaa 
  AAAUCUCUUC  GC GAA  UCUa     g
  ||||||||||  || |||  ||||      
  UUUAGAGAAG  UG CUU  Aggu     u
UC          AG  U   -A    ugguu 

Annotation confidence High

Genome context

scaffold_4690: 9673197-9673257 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from der-mir-9680

Mature der-miR-9680-5p

• Accession: MIMAT0039222
• Description: Drosophila erecta der-miR-9680-5p mature miRNA
• Sequence: 1 - AAAUCUCUUCAAGCCGAAGGUCU - 23
• Evidence: experimental ; Illumina [1]

Mature der-miR-9680-3p

• Accession: MIMAT0039223
• Description: Drosophila erecta der-miR-9680-3p mature miRNA
• Sequence: 40 - AAUUCUGUGAGAAGAGAUUUCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250