miRBase entry: der-mir-9680

Stem-loop der-mir-9680

Accession

MI0030932

Description

Drosophila erecta der-mir-9680 precursor miRNA

Sequence

AAAUCUCUUCAAGCCGAAGGUCuauguaaguuugguugGAAUUCUGUGAGAAGAGAUUUCu
((((((((((..((.(((..((((............)))).))).))..))))))))))..

Structure

--          AA  C   GG    uguaa 
  AAAUCUCUUC  GC GAA  UCua     g
  ||||||||||  || |||  ||||      
  UUUAGAGAAG  UG CUU  AGgu     u
uC          AG  U   -A    ugguu

Annotation confidence Not enough data

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Genome context

scaffold_4690: 9673197-9673257 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from der-mir-9680

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-9680-5p

Accession	MIMAT0039222
Description	Drosophila erecta der-miR-9680-5p mature miRNA
Sequence	1 - AAAUCUCUUCAAGCCGAAGGUC - 22
Evidence	experimental Illumina [1]

Mature der-miR-9680-3p

Accession	MIMAT0039223
Description	Drosophila erecta der-miR-9680-3p mature miRNA
Sequence	39 - GAAUUCUGUGAGAAGAGAUUUC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250