Stem-loop dvi-mir-9540

Accession

MI0029279

Description

Drosophila virilis dvi-mir-9540 precursor miRNA

Sequence

ugguguuuacauuacaugaUUCGUACGUUACACUGAACAGauuucuacauuaaugaUCUGUUCAAUGGGAUGUGUGaauuauguguguaaaau
.....(((((((.(((((((((((((((..((.((((((((((...........)))))))))).))..))))))))))))))))))))))..

Structure

uggug       u               UA  C          ucua 
     uuuacau acaugaUUCGUACGU  CA UGAACAGauu    c
     ||||||| |||||||||||||||  || ||||||||||    a
     aaaugug uguauuaaGUGUGUA  GU ACUUGUCUag    u
---ua       -               GG  A          uaau 

Annotation confidence Low

Genome context

scaffold_12855: 6284791-6284883 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9540

Mature dvi-miR-9540-5p

• Accession: MIMAT0035622
• Description: Drosophila virilis dvi-miR-9540-5p mature miRNA
• Sequence: 20 - UUCGUACGUUACACUGAACAG - 40
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9540-3p

• Accession: MIMAT0035623
• Description: Drosophila virilis dvi-miR-9540-3p mature miRNA
• Sequence: 57 - UCUGUUCAAUGGGAUGUGUG - 76
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250