miRBase entry: dvi-mir-9540

Stem-loop dvi-mir-9540

Accession

MI0029279

Description

Drosophila virilis dvi-mir-9540 precursor miRNA

Sequence

ugguguuuacauuacaugaUUCGUACGUUACACUGAACAGauuucuacauuaaugaUCUGUUCAAUGGGAUGUGUGaauuauguguguaaaau
.....(((((((.(((((((((((((((..((.((((((((((...........)))))))))).))..))))))))))))))))))))))..

Structure

uggug       u               UA  C          ucua 
     uuuacau acaugaUUCGUACGU  CA UGAACAGauu    c
     ||||||| |||||||||||||||  || ||||||||||    a
     aaaugug uguauuaaGUGUGUA  GU ACUUGUCUag    u
---ua       -               GG  A          uaau

Annotation confidence Not enough data

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Genome context

scaffold_12855: 6284791-6284883 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9540

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9540-5p

Accession	MIMAT0035622
Description	Drosophila virilis dvi-miR-9540-5p mature miRNA
Sequence	20 - UUCGUACGUUACACUGAACAG - 40
Evidence	experimental Illumina [1-2]

Mature dvi-miR-9540-3p

Accession	MIMAT0035623
Description	Drosophila virilis dvi-miR-9540-3p mature miRNA
Sequence	57 - UCUGUUCAAUGGGAUGUGUG - 76
Evidence	experimental Illumina [1-2]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250