miRBase entry: dse-mir-978b

Stem-loop dse-mir-978b

Accession

MI0030889

Description

Drosophila sechellia dse-mir-978b precursor miRNA

Sequence

caauuuacgggacuggacacgauucucgacuacaacgUAAGCCAGUGGCGUAGAUUGCag
(((((((((..(((((..(((..............)))...)))))..)))))))))...

Structure

---         gg     -ac   auucuc 
   caauuuacg  acugg   acg      g
   |||||||||  |||||   |||       
   GUUAGAUGC  UGACC   Ugc      a
gaC         GG     GAA   aacauc

Annotation confidence Not enough data

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Genome context

scaffold_8: 1737879-1737938 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from dse-mir-978b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-978b

Accession	MIMAT0039155
Description	Drosophila sechellia dse-miR-978b mature miRNA
Sequence	38 - UAAGCCAGUGGCGUAGAUUGC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250