Stem-loop dse-mir-973

Accession

MI0030878

Description

Drosophila sechellia dse-mir-973 precursor miRNA

Sequence

cGGGGUUGGUGGUUGAACUUCGAuuuuagguauuuaaauaagauaaAUCUGUUCAUUCUUCGACCCAAa
..(((((((.((.(((((...(((((....(((....)))....))))).))))).)).)))))))...

Structure

-cG       U  U     UUC     uagg   u 
   GGGUUGG GG UGAAC   GAuuu    uau u
   ||||||| || |||||   |||||    |||  
   CCCAGCU CU ACUUG   CUAaa    aua a
aAA       U  U     --U     uaga   a 

Annotation confidence Low

Genome context

scaffold_8: 1727993-1728061 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from dse-mir-973

Mature dse-miR-973-5p

• Accession: MIMAT0039141
• Description: Drosophila sechellia dse-miR-973-5p mature miRNA
• Sequence: 2 - GGGGUUGGUGGUUGAACUUCGA - 23
• Evidence: experimental ; Illumina [1]

Mature dse-miR-973-3p

• Accession: MIMAT0039142
• Description: Drosophila sechellia dse-miR-973-3p mature miRNA
• Sequence: 47 - AUCUGUUCAUUCUUCGACCCAA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250