miRBase entry: dvi-mir-9705-1

Stem-loop dvi-mir-9705-1

Accession

MI0030956

Description

Drosophila virilis dvi-mir-9705-1 precursor miRNA

Sequence

UCUGAUCAGUUGUGUAGUGUGGcguuuuacugacuugcUACGAUACCAACUGGCCAGAGg
((((.(((((((.(((.(((((((((.....)))..)))))).)))))))))).))))..

Structure

--    A       U   G      --   u 
  UCUG UCAGUUG GUA UGUGGc  guu u
  |||| ||||||| ||| ||||||  ||| a
  AGAC GGUCAAC CAU GCAUcg  cag c
gG    C       -   A      uu   u

Annotation confidence Not enough data

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Genome context

scaffold_12963: 330138-330197 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-9705-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9705-5p

Accession	MIMAT0039260
Description	Drosophila virilis dvi-miR-9705-5p mature miRNA
Sequence	1 - UCUGAUCAGUUGUGUAGUGUGG - 22
Evidence	experimental Illumina [1]

Mature dvi-miR-9705-3p

Accession	MIMAT0039261
Description	Drosophila virilis dvi-miR-9705-3p mature miRNA
Sequence	39 - UACGAUACCAACUGGCCAGAG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250