miRBase entry: dvi-mir-9709

Stem-loop dvi-mir-9709

Accession

MI0030966

Description

Drosophila virilis dvi-mir-9709 precursor miRNA

Sequence

gccuauuuuucgagucaugugggcuUUGCACUUCGCUUUUUAUACAACGuguuucuuuuuuaguaucgUGUGUAAAAACGAAGUGUUAAAcucaugaggcuagguuacaacgcuugg
((.......((.((((.((((((.((.((((((((.((((((((((.((.....((.....))...)))))))))))))))))))).)).)))))).)))).)).......))....

Structure

----  cuauuuu  g    a      c  U        C          A  uguuu  u 
    gc       uc aguc uguggg uU GCACUUCG UUUUUAUACA CG     cu u
    ||       || |||| |||||| || |||||||| |||||||||| ||     || u
    cg       gg ucgg guacuc AA UGUGAAGC AAAAAUGUGU gc     ga u
gguu  caacauu  a    a      A  U        -          -  --uau  u

Annotation confidence Not enough data

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Genome context

scaffold_12970: 9428722-9428838 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9709

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9709-5p

Accession	MIMAT0039281
Description	Drosophila virilis dvi-miR-9709-5p mature miRNA
Sequence	26 - UUGCACUUCGCUUUUUAUACAACG - 49
Evidence	experimental Illumina [1]

Mature dvi-miR-9709-3p

Accession	MIMAT0039282
Description	Drosophila virilis dvi-miR-9709-3p mature miRNA
Sequence	69 - UGUGUAAAAACGAAGUGUUAAA - 90
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250