Stem-loop dvi-mir-9709

Accession

MI0030966

Description

Drosophila virilis dvi-mir-9709 precursor miRNA

Sequence

gccuauuuuucgagucaugugggcuUUGCACUUCGCUUUUUAUACAACGuguuucuuuuuuaguaucgUGUGUAAAAACGAAGUGUUAAAcucaugaggcuagguuacaacgcuugg
((.......((.((((.((((((.((.((((((((.((((((((((.((.....((.....))...)))))))))))))))))))).)).)))))).)))).)).......))....

Structure

----  cuauuuu  g    a      c  U        C          A  uguuu  u 
    gc       uc aguc uguggg uU GCACUUCG UUUUUAUACA CG     cu u
    ||       || |||| |||||| || |||||||| |||||||||| ||     || u
    cg       gg ucgg guacuc AA UGUGAAGC AAAAAUGUGU gc     ga u
gguu  caacauu  a    a      A  U        -          -  --uau  u 

Annotation confidence Low

Genome context

scaffold_12970: 9428722-9428838 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9709

Mature dvi-miR-9709-5p

• Accession: MIMAT0039281
• Description: Drosophila virilis dvi-miR-9709-5p mature miRNA
• Sequence: 26 - UUGCACUUCGCUUUUUAUACAACG - 49
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9709-3p

• Accession: MIMAT0039282
• Description: Drosophila virilis dvi-miR-9709-3p mature miRNA
• Sequence: 69 - UGUGUAAAAACGAAGUGUUAAA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250