Stem-loop dsi-mir-973

Accession

MI0030855

Description

Drosophila simulans dsi-mir-973 precursor miRNA

Sequence

cguauacuuuuCCGGGUUGGUGGUUGAACUUCGauuuuaagcauuuaaauaagauaaaUCUGUUCAUUCUUCGACCCAAAaaguucacgugaaga
(((..((((((..(((((((.((.(((((...(((((..................))))).))))).)).))))))).))))))..)))......

Structure

------   au      CC       U  U     UUC     uaagcauu 
      cgu  acuuuu  GGGUUGG GG UGAAC   Gauuu        u
      |||  ||||||  ||||||| || |||||   |||||         
      gca  ugaaAA  CCCAGCU CU ACUUG   CUaaa        a
agaagu   cu      -A       U  U     --U     uagaauaa 

Annotation confidence Low

Genome context

chrX: 15011304-15011398 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-973

Mature dsi-miR-973-5p

• Accession: MIMAT0039113
• Description: Drosophila simulans dsi-miR-973-5p mature miRNA
• Sequence: 12 - CCGGGUUGGUGGUUGAACUUCG - 33
• Evidence: experimental ; Illumina [1]

Mature dsi-miR-973-3p

• Accession: MIMAT0039114
• Description: Drosophila simulans dsi-miR-973-3p mature miRNA
• Sequence: 59 - UCUGUUCAUUCUUCGACCCAAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250