miRBase entry: dsi-mir-973

Stem-loop dsi-mir-973

Accession

MI0030855

Description

Drosophila simulans dsi-mir-973 precursor miRNA

Sequence

cguauacuuuuCCGGGUUGGUGGUUGAACUUCGauuuuaagcauuuaaauaagauaaaUCUGUUCAUUCUUCGACCCAAAaaguucacgugaaga
(((..((((((..(((((((.((.(((((...(((((..................))))).))))).)).))))))).))))))..)))......

Structure

------   au      CC       U  U     UUC     uaagcauu 
      cgu  acuuuu  GGGUUGG GG UGAAC   Gauuu        u
      |||  ||||||  ||||||| || |||||   |||||         
      gca  ugaaAA  CCCAGCU CU ACUUG   CUaaa        a
agaagu   cu      -A       U  U     --U     uagaauaa

Annotation confidence Not enough data

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Genome context

chrX: 15011304-15011398 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-973

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-973-5p

Accession	MIMAT0039113
Description	Drosophila simulans dsi-miR-973-5p mature miRNA
Sequence	12 - CCGGGUUGGUGGUUGAACUUCG - 33
Evidence	experimental Illumina [1]

Mature dsi-miR-973-3p

Accession	MIMAT0039114
Description	Drosophila simulans dsi-miR-973-3p mature miRNA
Sequence	59 - UCUGUUCAUUCUUCGACCCAAA - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250