Stem-loop dvi-mir-9543a

Accession

MI0029281

Description

Drosophila virilis dvi-mir-9543a precursor miRNA

Sequence

uuuuggucuaccuuugacccaaugccacgugcaaccUGAGGUGAACAUGUAAUAUAUaacuguuuacgauauguuAAAUAUUGCUUGUUUACUCAGGcugcaagcggaccaguuaucgagguugacaucaa
.....(((.(((((((((......((.(.((((.((((((.((((((.(((((((.((((((((...)))).)))).))))))).)))))))))))).)))).).))....))))..))))).))).....

Structure

uuuug   u     --    ccaaug  a g    a      G      U       A    -    u 
     guc accuu  ugac      cc c ugca ccUGAG UGAACA GUAAUAU Uaac uguu  
     ||| |||||  ||||      || | |||| |||||| |||||| ||||||| |||| |||| a
     cag uggag  auug      gg g acgu GGACUC AUUUGU CGUUAUA Auug auag  
aacua   u     cu    --acca  c a    c      -      U       A    u    c 

Annotation confidence Low

Genome context

scaffold_12970: 9427846-9427976 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from dvi-mir-9543a

Mature dvi-miR-9543a-5p

• Accession: MIMAT0035626
• Description: Drosophila virilis dvi-miR-9543a-5p mature miRNA
• Sequence: 37 - UGAGGUGAACAUGUAAUAUAU - 57
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9543a-3p

• Accession: MIMAT0035627
• Description: Drosophila virilis dvi-miR-9543a-3p mature miRNA
• Sequence: 76 - AAAUAUUGCUUGUUUACUCAGG - 97
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250