Stem-loop dse-mir-312

Accession

MI0009372

Description

Drosophila sechellia dse-mir-312 precursor miRNA

Sequence

156425 reads, 49237.0 reads per million, 1 experiments

guuuUGGUUCGUCACAAGGGCAAUUcugcauuuuuaaacuugUAUUGCACUUGAGACGGCCGAAUU
..((((((.((((.((((.(((((...(((..........)))))))).)))).))))))))))..

Structure

gu      U    A    G     Ucu   uuuu 
  uuUGGU CGUC CAAG GCAAU   gca    u
  |||||| |||| |||| |||||   |||     
  AAGCCG GCAG GUUC CGUUA   Ugu    a
UU      -    A    A     ---   ucaa 

Annotation confidence High

Genome context

scaffold_1: 14025763-14025828 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-312

Mature dse-miR-312-5p

• Accession: MIMAT0037344
• Description: Drosophila sechellia dse-miR-312-5p mature miRNA
• Sequence: 5 - UGGUUCGUCACAAGGGCAAUU - 25
• Evidence: experimental ; Illumina [2]

Mature dse-miR-312-3p

• Accession: MIMAT0008810
• Description: Drosophila sechellia dse-miR-312-3p mature miRNA
• Sequence: 43 - UAUUGCACUUGAGACGGCCGAAUU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250