Stem-loop dsi-bantam

Accession

MI0009426

Description

Drosophila simulans dsi-bantam precursor miRNA

Literature search

2 open access papers mention dsi-bantam
(6 sentences)

Sequence

4103 reads, 22356.0 reads per million, 6 experiments

auuugacuacgaaaCCGGUUUUCGAUUUGGUUUGACUguuuuucauacaagUGAGAUCAUUUUGAAAGCUGAUUuugucaa
........((((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))...

Structure

auuugacu      C          UU      G   -  uu 
        acgaaa CGGUUUUCGA  UGGUUU ACU gu  u
        |||||| ||||||||||  |||||| ||| ||  u
        uguuUU GUCGAAAGUU  ACUAGA Uga ca  c
-----aac      A          UU      G   a  ua 

Annotation confidence High

Genome context

ref|NT_479535.1|: 606933-607013 [+]

Mature dsi-bantam-5p

• Accession: MIMAT0053480
• Description: Drosophila simulans dsi-bantam-5p mature miRNA
• Sequence: 15 - CCGGUUUUCGAUUUGGUUUGACU - 37
• Evidence: not_experimental

Mature dsi-bantam-3p

• Accession: MIMAT0008861
• Description: Drosophila simulans dsi-bantam-3p mature miRNA
• Sequence: 52 - UGAGAUCAUUUUGAAAGCUGAUU - 74
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218