Stem-loop der-mir-978

Accession

MI0030927

Description

Drosophila erecta der-mir-978 precursor miRNA

Sequence

gugggcggcacaaccagCAUUCUACGCCGCUGGCUUACGUuguacucgaaaaucGUGUCCAGUGCCGUUGAUUGCaauuguguggacgcaaa
(((..(.((((((...(((.((.(((.((((((..((((..............)))).)))))).))).)).)))..)))))).).)))...

Structure

---   gg g      cca   U  U   C      CU    Uuguac 
   gug  c gcacaa   gCA UC ACG CGCUGG  UACG      u
   |||  | ||||||   ||| || ||| ||||||  ||||       
   cgc  g uguguu   CGU AG UGC GUGACC  GUGc      c
aaa   -a g      -aa   U  U   C      -U    uaaaag 

Annotation confidence Low

Genome context

scaffold_4690: 9691198-9691289 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from der-mir-978

Mature der-miR-978-5p

• Accession: MIMAT0039212
• Description: Drosophila erecta der-miR-978-5p mature miRNA
• Sequence: 18 - CAUUCUACGCCGCUGGCUUACGU - 40
• Evidence: experimental ; Illumina [1]

Mature der-miR-978-3p

• Accession: MIMAT0039213
• Description: Drosophila erecta der-miR-978-3p mature miRNA
• Sequence: 55 - GUGUCCAGUGCCGUUGAUUGC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250