Stem-loop dvi-mir-9712

Accession

MI0030972

Description

Drosophila virilis dvi-mir-9712 precursor miRNA

Sequence

6684 reads, 27.0 reads per million, 32 experiments

gcaacgucugCUACUUGCUUAGUCGUUAACCAUAguuuucuuuauauaacuauaAAGAUUGACGGCUGAGUAGGuaacaggcgcugcc
(((.((((((.((((((((((((((((((.........((((((((....)))))))))))))))))))))))))).)))))).))).

Structure

-   a      C                  CCAUAguuu        u 
 gca cgucug UACUUGCUUAGUCGUUAA         ucuuuaua a
 ||| |||||| ||||||||||||||||||         ||||||||  
 cgu gcggac auGGAUGAGUCGGCAGUU         AGAAauau a
c   c      a                  ---------        c 

Annotation confidence Medium

Genome context

scaffold_12970: 9426825-9426912 [-]

Clustered miRNAs

18 other miRNAs are < 10 kb from dvi-mir-9712

Mature dvi-miR-9712-5p

• Accession: MIMAT0039291
• Description: Drosophila virilis dvi-miR-9712-5p mature miRNA
• Sequence: 11 - CUACUUGCUUAGUCGUUAACCAUA - 34
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9712-3p

• Accession: MIMAT0039292
• Description: Drosophila virilis dvi-miR-9712-3p mature miRNA
• Sequence: 55 - AAGAUUGACGGCUGAGUAGG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250