miRBase entry: dvi-mir-9708b

Stem-loop dvi-mir-9708b

Accession

MI0030961

Description

Drosophila virilis dvi-mir-9708b precursor miRNA

Sequence

agcuuuugcuuggcauauuggcagacgaauUGCGGGCAUGUCCAAGACAUAUaauuuauauuugaacuuAUAUGUUUUAGACGUGUUCAGGauuagucucucauuaguccaccucc
(((....)))(((..((.(((.((((.((((..(((((((((.(((((((((((((((....)))).))))))))))).)))))))))..)))).)))).))).))..))).....

Structure

agcuuuugcu   ca  u   c    g    GC         C           -    u 
          ugg  ua ugg agac aauU  GGGCAUGUC AAGACAUAUaa uuua a
          |||  || ||| |||| ||||  ||||||||| ||||||||||| ||||  
          acc  au acu ucug uuaG  CUUGUGCAG UUUUGUAUAuu aagu u
-----ccucc   ug  u   c    a    GA         A           c    u

Annotation confidence Not enough data

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Genome context

scaffold_13042: 2032720-2032835 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-9708b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9708b-5p

Accession	MIMAT0039271
Description	Drosophila virilis dvi-miR-9708b-5p mature miRNA
Sequence	31 - UGCGGGCAUGUCCAAGACAUAU - 52
Evidence	experimental Illumina [1]

Mature dvi-miR-9708b-3p

Accession	MIMAT0039272
Description	Drosophila virilis dvi-miR-9708b-3p mature miRNA
Sequence	70 - AUAUGUUUUAGACGUGUUCAGG - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250