Stem-loop dvi-mir-9708b

Accession

MI0030961

Description

Drosophila virilis dvi-mir-9708b precursor miRNA

Sequence

agcuuuugcuuggcauauuggcagacgaauUGCGGGCAUGUCCAAGACAUAUaauuuauauuugaacuuAUAUGUUUUAGACGUGUUCAGGauuagucucucauuaguccaccucc
(((....)))(((..((.(((.((((.((((..(((((((((.(((((((((((((((....)))).))))))))))).)))))))))..)))).)))).))).))..))).....

Structure

agcuuuugcu   ca  u   c    g    GC         C           -    u 
          ugg  ua ugg agac aauU  GGGCAUGUC AAGACAUAUaa uuua a
          |||  || ||| |||| ||||  ||||||||| ||||||||||| ||||  
          acc  au acu ucug uuaG  CUUGUGCAG UUUUGUAUAuu aagu u
-----ccucc   ug  u   c    a    GA         A           c    u 

Annotation confidence Low

Genome context

scaffold_13042: 2032720-2032835 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-9708b

Mature dvi-miR-9708b-5p

• Accession: MIMAT0039271
• Description: Drosophila virilis dvi-miR-9708b-5p mature miRNA
• Sequence: 31 - UGCGGGCAUGUCCAAGACAUAU - 52
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9708b-3p

• Accession: MIMAT0039272
• Description: Drosophila virilis dvi-miR-9708b-3p mature miRNA
• Sequence: 70 - AUAUGUUUUAGACGUGUUCAGG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250