Stem-loop dvi-mir-9708a

Accession

MI0030960

Description

Drosophila virilis dvi-mir-9708a precursor miRNA

Sequence

aauuucuuuaguguucuagcagaugauugaCGAGCACAUCCAAAACAUAUAAuauguauauauauaauuAUAUGUGUUGGCUGUGUUCCUCagucgucuacucagcucuacccaaacgc
........(((.(((..((.((((((((((.(((((((.((((.(((((((((((((....)))).))))))))).)))).))))))).)))))))))).)).))).))).........

Structure

-aauuucuu   u   cu  c          C       U    A         -    a 
         uag guu  ag agaugauuga GAGCACA CCAA ACAUAUAAu augu u
         ||| |||  || |||||||||| ||||||| |||| ||||||||| ||||  
         auc cga  uc ucugcugaCU CUUGUGU GGUU UGUAUAuua uaua a
cgcaaaccc   u   -c  a          C       C    G         a    u 

Annotation confidence Low

Genome context

scaffold_13042: 2033003-2033121 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-9708a

Mature dvi-miR-9708a-5p

• Accession: MIMAT0039269
• Description: Drosophila virilis dvi-miR-9708a-5p mature miRNA
• Sequence: 31 - CGAGCACAUCCAAAACAUAUAA - 52
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9708a-3p

• Accession: MIMAT0039270
• Description: Drosophila virilis dvi-miR-9708a-3p mature miRNA
• Sequence: 70 - AUAUGUGUUGGCUGUGUUCCUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250