Stem-loop dvi-mir-9692

Accession

MI0030933

Description

Drosophila virilis dvi-mir-9692 precursor miRNA

Sequence

40758 reads, 113.0 reads per million, 37 experiments

gagaggcgccaauaucauaUUGUACAUUGAACGGUAGCUAUCGGauguauuugauaaucCUAGCAACCGUCUUUGUGCAAaacgauguggcacacauu
.....(.((((.((((...(((((((..((.((((.((((..((((..........)))))))).))))))..)))))))...)))))))).).....

Structure

gagag c    a    aua       UU  A    A    UC    guau 
     g gcca uauc   UUGUACA  GA CGGU GCUA  GGau    u
     | |||| ||||   |||||||  || |||| ||||  ||||     
     c cggu guag   AACGUGU  CU GCCA CGAU  Ccua    u
uuaca a    -    caa       UU  -    A    --    auag 

Annotation confidence High

Genome context

scaffold_13042: 912386-912483 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from dvi-mir-9692

Mature dvi-miR-9692-5p

• Accession: MIMAT0039224
• Description: Drosophila virilis dvi-miR-9692-5p mature miRNA
• Sequence: 20 - UUGUACAUUGAACGGUAGCUAUCGG - 44
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9692-3p

• Accession: MIMAT0039225
• Description: Drosophila virilis dvi-miR-9692-3p mature miRNA
• Sequence: 60 - CUAGCAACCGUCUUUGUGCAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250