Stem-loop dvi-mir-974-1

Accession

MI0029290

Description

Drosophila virilis dvi-mir-974-1 precursor miRNA

Sequence

augaggccaauuucucuGAGCGAGCAAUGAAGUAAUAUUuguucgaccugauauaacaaAUAAGACUUUUUUGGUCGUUAGcaggaauuguccau
....((.((((((((((((.(((.(((.(((((..((((((((...........))))))))..))))).))).))))))).)))))))).))..

Structure

auga  c        -    G   G   U     AA        cgac 
    gg caauuucu cuGA CGA CAA GAAGU  UAUUuguu    c
    || |||||||| |||| ||| ||| |||||  ||||||||    u
    cc guuaagga GAUU GCU GUU UUUCA  AUAaacaa    g
--ua  u        c    -   G   U     GA        uaua 

Annotation confidence Low

Genome context

scaffold_13042: 917735-917829 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-974-1

Mature dvi-miR-974-1-5p

• Accession: MIMAT0035644
• Description: Drosophila virilis dvi-miR-974-1-5p mature miRNA
• Sequence: 18 - GAGCGAGCAAUGAAGUAAUAUU - 39
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-974-1-3p

• Accession: MIMAT0037536
• Description: Drosophila virilis dvi-miR-974-1-3p mature miRNA
• Sequence: 60 - AUAAGACUUUUUUGGUCGUUAG - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250