Stem-loop der-mir-2499

Accession

MI0030924

Description

Drosophila erecta der-mir-2499 precursor miRNA

Sequence

4686 reads, 19.0 reads per million, 17 experiments

cgUGCGUUUAUGUCAGCGCAAUGCUuuuguuuggcggcAUGCGGAUGGCAUACACGUCCAc
.(.((((.(((((((.((((.((((..........))))))))..))))))).)))).)..

Structure

-c U    U       -G    A    uuug 
  g GCGU UAUGUCA  CGCA UGCU    u
  | |||| |||||||  |||| ||||     
  C UGCA AUACGGU  GCGU Acgg    u
cA C    C       AG    -    cggu 

Annotation confidence Medium

Genome context

scaffold_4690: 9687401-9687461 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from der-mir-2499

Mature der-miR-2499-5p

• Accession: MIMAT0053351
• Description: Drosophila erecta der-miR-2499-5p mature miRNA
• Sequence: 3 - UGCGUUUAUGUCAGCGCAAUGCU - 25
• Evidence: experimental ; Illumina [1]

Mature der-miR-2499-3p

• Accession: MIMAT0039207
• Description: Drosophila erecta der-miR-2499-3p mature miRNA
• Sequence: 39 - AUGCGGAUGGCAUACACGUCCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250