Stem-loop dsi-mir-972

Accession

MI0030854

Description

Drosophila simulans dsi-mir-972 precursor miRNA

Sequence

agaaugauagugaauugcUAAAUAUUUUCUUUGUAUAAAugacuuuuaacaUUUGUACAAUAUUAAUAUUUaaacauuucucgaaucaaaguaugccacauca
....((((.(.(((.((.((((((((....(((((((((((........)))))))))))....))))))))..)).))).)..))))...............

Structure

-----------agaa    -a u   u  -c        UUCU           acu 
               ugau  g gaa ug  UAAAUAUU    UUGUAUAAAug   u
               ||||  | ||| ||  ||||||||    |||||||||||    
               acua  c cuu ac  aUUUAUAA    AACAUGUUUac   u
acuacaccguaugaa    ag u   u  aa        UUAU           aau 

Annotation confidence Low

Genome context

chrX: 15010940-15011042 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-972

Mature dsi-miR-972-5p

• Accession: MIMAT0039111
• Description: Drosophila simulans dsi-miR-972-5p mature miRNA
• Sequence: 19 - UAAAUAUUUUCUUUGUAUAAA - 39
• Evidence: experimental ; Illumina [1]

Mature dsi-miR-972-3p

• Accession: MIMAT0039112
• Description: Drosophila simulans dsi-miR-972-3p mature miRNA
• Sequence: 52 - UUUGUACAAUAUUAAUAUUU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250