Stem-loop dvi-mir-9542d

Accession

MI0030975

Description

Drosophila virilis dvi-mir-9542d precursor miRNA

Sequence

AUUGAGGCUUUGCAAUCGAAGaguaguuuugauaugcucUUGGCUUGUAAAGUGUCAACAu
.((((.(((((((((.(.(((((((.........))))))).).))))))))).))))...

Structure

--A    G         U G       guu 
   UUGA GCUUUGCAA C AAGagua   u
   |||| ||||||||| | |||||||   u
   AACU UGAAAUGUU G UUcucgu   g
uAC    G         C G       aua 

Annotation confidence Low

Genome context

scaffold_12970: 9419392-9419452 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from dvi-mir-9542d

Mature dvi-miR-9542d-5p

• Accession: MIMAT0039297
• Description: Drosophila virilis dvi-miR-9542d-5p mature miRNA
• Sequence: 1 - AUUGAGGCUUUGCAAUCGAAG - 21
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9542d-3p

• Accession: MIMAT0039298
• Description: Drosophila virilis dvi-miR-9542d-3p mature miRNA
• Sequence: 40 - UUGGCUUGUAAAGUGUCAACA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250