miRBase entry: dvi-mir-974-2

Stem-loop dvi-mir-974-2

Accession

MI0029291

Description

Drosophila virilis dvi-mir-974-2 precursor miRNA

Sequence

aacugggcauucccucuGAGCGAGCAGAGAAGUAUUAUUugcgugaaucugauaucaaaUAAGACUUUUUUGGUUCGCUAUGagguauuguucau
...((((((...((((..(((((((((((((((.(((((((.(((.......)))))))))).)))))))).)))))))..))))...)))))).

Structure

aac      uuc    uG       -        A       c   aa 
   ugggca   ccuc  AGCGAGC AGAGAAGU UUAUUug gug  u
   ||||||   ||||  ||||||| |||||||| ||||||| |||  c
   acuugu   ggaG  UCGCUUG UUUUUUCA AAUaaac uau  u
--u      uau    UA       G        G       -   ag

Annotation confidence Not enough data

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Genome context

scaffold_13042: 917557-917651 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-974-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-974-2-5p

Accession	MIMAT0035645
Description	Drosophila virilis dvi-miR-974-2-5p mature miRNA
Sequence	18 - GAGCGAGCAGAGAAGUAUUAUU - 39
Evidence	experimental Illumina [1-2]

Mature dvi-miR-974-3p

Accession	MIMAT0035646
Description	Drosophila virilis dvi-miR-974-3p mature miRNA
Sequence	60 - UAAGACUUUUUUGGUUCGCUAUG - 82
Evidence	experimental Illumina [1-2]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250