miRBase entry: dvi-mir-9696a

Stem-loop dvi-mir-9696a

Accession

MI0030937

Description

Drosophila virilis dvi-mir-9696a precursor miRNA

Sequence

guggcauaugaagcgaAAGGCCCUUUUCGACUGCUAUGUgcauuuuuugacuagucauagaUAACAGUCUGAAAGGGCCUUUUggcucagaug
....(((.(((..((((((((((((((.((((((((((.((............)))))))....))))).))))))))))))))..))).)))

Structure

gugg   a   ag              C     ----     U  auuuu 
    cau uga  cgaAAGGCCCUUUU GACUG    CUAUG gc     u
    ||| |||  |||||||||||||| |||||    ||||| ||      
    gua acu  gUUUUCCGGGAAAG CUGAC    gauac ug     u
----   g   cg              U     AAUa     -  aucag

Annotation confidence Not enough data

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Genome context

scaffold_13042: 903188-903280 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from dvi-mir-9696a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9696a-5p

Accession	MIMAT0039232
Description	Drosophila virilis dvi-miR-9696a-5p mature miRNA
Sequence	17 - AAGGCCCUUUUCGACUGCUAUGU - 39
Evidence	experimental Illumina [1]

Mature dvi-miR-9696a-3p

Accession	MIMAT0039233
Description	Drosophila virilis dvi-miR-9696a-3p mature miRNA
Sequence	62 - UAACAGUCUGAAAGGGCCUUUU - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250