Stem-loop dvi-mir-9696a

Accession

MI0030937

Description

Drosophila virilis dvi-mir-9696a precursor miRNA

Sequence

guggcauaugaagcgaAAGGCCCUUUUCGACUGCUAUGUgcauuuuuugacuagucauagaUAACAGUCUGAAAGGGCCUUUUggcucagaug
....(((.(((..((((((((((((((.((((((((((.((............)))))))....))))).))))))))))))))..))).)))

Structure

gugg   a   ag              C     ----     U  auuuu 
    cau uga  cgaAAGGCCCUUUU GACUG    CUAUG gc     u
    ||| |||  |||||||||||||| |||||    ||||| ||      
    gua acu  gUUUUCCGGGAAAG CUGAC    gauac ug     u
----   g   cg              U     AAUa     -  aucag 

Annotation confidence Low

Genome context

scaffold_13042: 903188-903280 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from dvi-mir-9696a

Mature dvi-miR-9696a-5p

• Accession: MIMAT0039232
• Description: Drosophila virilis dvi-miR-9696a-5p mature miRNA
• Sequence: 17 - AAGGCCCUUUUCGACUGCUAUGU - 39
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9696a-3p

• Accession: MIMAT0039233
• Description: Drosophila virilis dvi-miR-9696a-3p mature miRNA
• Sequence: 62 - UAACAGUCUGAAAGGGCCUUUU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250