Stem-loop dse-mir-978a

Accession

MI0030888

Description

Drosophila sechellia dse-mir-978a precursor miRNA

Sequence

ugCAAUCUACGCCACUGGCUUACGUuguagucgagaaucgUGUCCAGUCCCGUAAAUUGCAGu
((((((.((((..(((((..((((((.(.....).)).)))).)))))..)))).))))))..

Structure

--      C    CC     CU    -  g a 
  ugCAAU UACG  ACUGG  UACG Uu u g
  |||||| ||||  |||||  |||| || | u
  ACGUUA AUGC  UGACC  GUgc aa a c
uG      A    CC     -U    u  g g 

Annotation confidence Low

Genome context

scaffold_8: 1737880-1737942 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dse-mir-978a

Mature dse-miR-978a-5p

• Accession: MIMAT0039153
• Description: Drosophila sechellia dse-miR-978a-5p mature miRNA
• Sequence: 3 - CAAUCUACGCCACUGGCUUACGU - 25
• Evidence: experimental ; Illumina [1]

Mature dse-miR-978a-3p

• Accession: MIMAT0039154
• Description: Drosophila sechellia dse-miR-978a-3p mature miRNA
• Sequence: 41 - UGUCCAGUCCCGUAAAUUGCAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250