Stem-loop dvi-mir-977

Accession

MI0029293

Description

Drosophila virilis dvi-mir-977 precursor miRNA

Sequence

ccccuggcccagcccaguuGCGAUUGCGCGGACAUCUCAUCguauaaacauucgauaaccaaCGAGAUAUUCACGUUAUCGAGAcugagacgucg
.....(((...)))(((((.((((.(((.(((.(((((((((..........)))).......))))).))).))).)))).)))))........

Structure

ccccuggcccagcc     G    U   C   C     -------    uaua 
              caguu CGAU GCG GGA AUCUC       AUCg    a
              ||||| |||| ||| ||| |||||       ||||     
              gucAG GCUA UGC CUU UAGAG       uagc    a
------gcugcaga     A    U   A   A     Caaccaa    uuac 

Annotation confidence Low

Genome context

scaffold_13042: 906576-906670 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from dvi-mir-977

Mature dvi-miR-977-3p

• Accession: MIMAT0035649
• Description: Drosophila virilis dvi-miR-977-3p mature miRNA
• Sequence: 63 - CGAGAUAUUCACGUUAUCGAGA - 84
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-977-5p

• Accession: MIMAT0037537
• Description: Drosophila virilis dvi-miR-977-5p mature miRNA
• Sequence: 20 - GCGAUUGCGCGGACAUCUCAUC - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250