Stem-loop dse-mir-2499

Accession

MI0030887

Description

Drosophila sechellia dse-mir-2499 precursor miRNA

Sequence

293 reads, 92.0 reads per million, 1 experiments

AGGCGUGGACGUCAGCACAAUGCCUuuguuuggcggcAUGUGGAUGACGUUCAUGUCCac
.(((((((((((((.((((.((((..........))))))))..)))))))))))))...

Structure

--A             -G    A    Uuug 
   GGCGUGGACGUCA  CACA UGCC    u
   |||||||||||||  |||| ||||     
   CUGUACUUGCAGU  GUGU Acgg    u
caC             AG    -    cggu 

Annotation confidence High

Genome context

scaffold_8: 1733353-1733412 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-2499

Mature dse-miR-2499-5p

• Accession: MIMAT0039151
• Description: Drosophila sechellia dse-miR-2499-5p mature miRNA
• Sequence: 1 - AGGCGUGGACGUCAGCACAAUGCCU - 25
• Evidence: experimental ; Illumina [1]

Mature dse-miR-2499-3p

• Accession: MIMAT0039152
• Description: Drosophila sechellia dse-miR-2499-3p mature miRNA
• Sequence: 38 - AUGUGGAUGACGUUCAUGUCC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250