miRBase entry: dse-mir-2499

Stem-loop dse-mir-2499

Accession

MI0030887

Description

Drosophila sechellia dse-mir-2499 precursor miRNA

Sequence

AGGCGUGGACGUCAGCACAAUGCcuuuguuuggcggcAUGUGGAUGACGUUCAUGUCCAc
.(((((((((((((.((((.((((..........))))))))..)))))))))))))...

Structure

--A             -G    A    uuug 
   GGCGUGGACGUCA  CACA UGCc    u
   |||||||||||||  |||| ||||     
   CUGUACUUGCAGU  GUGU Acgg    u
cAC             AG    -    cggu

Annotation confidence Not enough data

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Genome context

scaffold_8: 1733353-1733412 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-2499

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-2499-5p

Accession	MIMAT0039151
Description	Drosophila sechellia dse-miR-2499-5p mature miRNA
Sequence	1 - AGGCGUGGACGUCAGCACAAUGC - 23
Evidence	experimental Illumina [1]

Mature dse-miR-2499-3p

Accession	MIMAT0039152
Description	Drosophila sechellia dse-miR-2499-3p mature miRNA
Sequence	38 - AUGUGGAUGACGUUCAUGUCCA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250