Stem-loop dvi-mir-9538b

Accession

MI0030943

Description

Drosophila virilis dvi-mir-9538b precursor miRNA

Sequence

AAUUGUUCUUGCUGCCGUCUcaucuuacauuugguucuugcucgaUGAGAUCAGUCAGAACAAUUCGu
(((((((((.((((..((((((((...((.........))...)))))))))))).)))))))))...

Structure

---         U    CC        uua  uuu 
   AAUUGUUCU GCUG  GUCUcauc   ca   g
   ||||||||| ||||  ||||||||   ||   g
   UUAACAAGA UGAC  UAGAGUag   gu   u
uGC         C    --        cuc  ucu 

Annotation confidence Low

Genome context

scaffold_12855: 6282879-6282946 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9538b

Mature dvi-miR-9538b-5p

• Accession: MIMAT0039244
• Description: Drosophila virilis dvi-miR-9538b-5p mature miRNA
• Sequence: 1 - AAUUGUUCUUGCUGCCGUCU - 20
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9538b-3p

• Accession: MIMAT0039245
• Description: Drosophila virilis dvi-miR-9538b-3p mature miRNA
• Sequence: 46 - UGAGAUCAGUCAGAACAAUUCG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250