miRBase entry: dvi-mir-9538b

Stem-loop dvi-mir-9538b

Accession

MI0030943

Description

Drosophila virilis dvi-mir-9538b precursor miRNA

Sequence

AAUUGUUCUUGCUGCCGUCUcaucuuacauuugguucuugcucgaUGAGAUCAGUCAGAACAAUUCGu
(((((((((.((((..((((((((...((.........))...)))))))))))).)))))))))...

Structure

---         U    CC        uua  uuu 
   AAUUGUUCU GCUG  GUCUcauc   ca   g
   ||||||||| ||||  ||||||||   ||   g
   UUAACAAGA UGAC  UAGAGUag   gu   u
uGC         C    --        cuc  ucu

Annotation confidence Not enough data

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Genome context

scaffold_12855: 6282879-6282946 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9538b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9538b-5p

Accession	MIMAT0039244
Description	Drosophila virilis dvi-miR-9538b-5p mature miRNA
Sequence	1 - AAUUGUUCUUGCUGCCGUCU - 20
Evidence	experimental Illumina [1]

Mature dvi-miR-9538b-3p

Accession	MIMAT0039245
Description	Drosophila virilis dvi-miR-9538b-3p mature miRNA
Sequence	46 - UGAGAUCAGUCAGAACAAUUCG - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250