miRBase entry: dsi-mir-313

Stem-loop dsi-mir-313

Accession

MI0009439

Description

Drosophila simulans dsi-mir-313 precursor miRNA

Sequence

uucUGCUGCGCAUUGGGGCACUACUGuuuuuuuuaaauugagUAUUGCACUUUUCACAGCCUUAaa
....((((.(....((((((.((((...............)))).))).)))..).))))......

Structure

--uucU    C CAUU   -   C    Guuuuu 
      GCUG G    GGG GCA UACU      u
      |||| |    ||| ||| ||||      u
      CGAC C    UUC CGU AUga      u
aaAUUC    A --UU   A   U    guuaaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr2R: 15132988-15133053 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from dsi-mir-313

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-313-3p

Accession	MIMAT0008874
Description	Drosophila simulans dsi-miR-313-3p mature miRNA
Sequence	43 - UAUUGCACUUUUCACAGCCUUA - 64
Evidence	experimental Illumina [2]

Mature dsi-miR-313-5p

Accession	MIMAT0037348
Description	Drosophila simulans dsi-miR-313-5p mature miRNA
Sequence	4 - UGCUGCGCAUUGGGGCACUACUG - 26
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250