Stem-loop dse-mir-992

Accession

MI0030868

Description

Drosophila sechellia dse-mir-992 precursor miRNA

Sequence

1229 reads, 387.0 reads per million, 1 experiments

CUGGUAUCAGAUAGGUGUAAUUuuuguguuuguauaguaCACGUUUCUGGAACCAAGCC
.((((.(((((.(.(((((....(((((....)))))))))).).))))).))))....

Structure

---C    A     U G     AUUu     u 
    UGGU UCAGA A GUGUA    uugug u
    |||| ||||| | |||||    |||||  
    ACCA GGUCU U CACau    gauau u
CCGA    A     U G     ----     g 

Annotation confidence High

Genome context

scaffold_1: 14027554-14027612 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-992

Mature dse-miR-992-5p

• Accession: MIMAT0039130
• Description: Drosophila sechellia dse-miR-992-5p mature miRNA
• Sequence: 1 - CUGGUAUCAGAUAGGUGUAAUU - 22
• Evidence: experimental ; Illumina [1]

Mature dse-miR-992-3p

• Accession: MIMAT0039131
• Description: Drosophila sechellia dse-miR-992-3p mature miRNA
• Sequence: 40 - CACGUUUCUGGAACCAAGCC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250