Stem-loop der-mir-311a

Accession

MI0009028

Description

Drosophila erecta der-mir-311a precursor miRNA

Sequence

uagauaguuuuuCGGACGGUAUCUGCGUCAAUAUUuccuuguuagaauaUAUUGCACAUUCACCGGCCUGAaaauaucaa
..((((..(((((((.((((...((.(.(((((((((.......))).))))))).))...))))..)))))))))))..

Structure

ua    gu       -A    AUC  C U      -   cu 
  gaua  uuuuCGG  CGGU   UG G CAAUAU Uuc  u
  ||||  |||||||  ||||   || | |||||| |||  g
  cuau  aaaAGUC  GCCA   AC C GUUAUa aag  u
aa    --       CG    CUU  A -      u   au 

Annotation confidence Not enough data

Genome context

scaffold_4845: 10616549-10616628 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from der-mir-311a

Mature der-miR-311a-3p

• Accession: MIMAT0008489
• Description: Drosophila erecta der-miR-311a-3p mature miRNA
• Sequence: 50 - UAUUGCACAUUCACCGGCCUGA - 71
• Evidence: experimental ; Illumina [2]

Mature der-miR-311a-5p

• Accession: MIMAT0037337
• Description: Drosophila erecta der-miR-311a-5p mature miRNA
• Sequence: 13 - CGGACGGUAUCUGCGUCAAUAUU - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250