Stem-loop dvi-mir-9542a

Accession

MI0029280

Description

Drosophila virilis dvi-mir-9542a precursor miRNA

Sequence

ugacagcguucagcuugcCCUGGCACUUUCUAAUCAAAGAgaugauuuuuauuuacucUUUGAUUGUAAAGGGCUAUAUCGggacgaacgcauugc
.....((((((..((((...((((.((((.(((((((((((.(((.......)))))))))))))).)))).))))...))))..)))))).....

Structure

ugaca      ag    cCC    A    C           a   uu 
     gcguuc  cuug   UGGC CUUU UAAUCAAAGAg uga  u
     ||||||  ||||   |||| |||| ||||||||||| |||  u
     cgcaag  ggGC   AUCG GAAA GUUAGUUUcuc auu  u
cguua      ca    UAU    G    U           -   ua 

Annotation confidence Not enough data

Genome context

scaffold_12970: 9418994-9419089 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9542a

Mature dvi-miR-9542a-5p

• Accession: MIMAT0035624
• Description: Drosophila virilis dvi-miR-9542a-5p mature miRNA
• Sequence: 19 - CCUGGCACUUUCUAAUCAAAGA - 40
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9542a-3p

• Accession: MIMAT0035625
• Description: Drosophila virilis dvi-miR-9542a-3p mature miRNA
• Sequence: 59 - UUUGAUUGUAAAGGGCUAUAUCG - 81
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250