miRBase entry: dvi-mir-9544c

Stem-loop dvi-mir-9544c


Accession
MI0030964
Description
Drosophila virilis dvi-mir-9544c precursor miRNA


Sequence

UUUGCACAGCGGUCUUUUUAAUgugguuuguuuugagaaucuuUAAAAGCACCGCCGCGCACAa
..(((.(.(((((.(((((((...(((((.......))))).))))))).))))).).)))...

Structure
-UU   A A     C       Ugu     gu 
   UGC C GCGGU UUUUUAA   gguuu  u
   ||| | ||||| |||||||   |||||  u
   ACG G CGCCA GAAAAUu   cuaag  u
aAC   C C     C       --u     ag 


Annotation confidence Not enough data
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Genome context
scaffold_12970: 9429631-9429694 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from dvi-mir-9544c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-9544c-5p

Accession MIMAT0039277
Description Drosophila virilis dvi-miR-9544c-5p mature miRNA
Sequence 1 - UUUGCACAGCGGUCUUUUUAAU - 22
Evidence experimental
Illumina [1]

Mature dvi-miR-9544c-3p

Accession MIMAT0039278
Description Drosophila virilis dvi-miR-9544c-3p mature miRNA
Sequence 44 - UAAAAGCACCGCCGCGCACA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250