Stem-loop dvi-mir-9544b

Accession

MI0030965

Description

Drosophila virilis dvi-mir-9544b precursor miRNA

Sequence

10695 reads, 38.0 reads per million, 28 experiments

UGCGCGGCGGCUCUUUUAACGAguguaacaaaaacuCGUUAUAAAAGACCACUGUGCAAAu
(((((((.((.(((((((((((((.........))))))..))))))))).)))))))...

Structure

---       C  C       --      gua 
   UGCGCGG GG UCUUUUA  ACGAgu   a
   ||||||| || |||||||  ||||||   c
   ACGUGUC CC AGAAAAU  UGCuca   a
uAA       A  -       AU      aaa 

Annotation confidence High

Genome context

scaffold_12970: 9429010-9429070 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from dvi-mir-9544b

Mature dvi-miR-9544b-5p

• Accession: MIMAT0039279
• Description: Drosophila virilis dvi-miR-9544b-5p mature miRNA
• Sequence: 1 - UGCGCGGCGGCUCUUUUAACGA - 22
• Evidence: experimental ; Illumina [1]

Mature dvi-miR-9544b-3p

• Accession: MIMAT0039280
• Description: Drosophila virilis dvi-miR-9544b-3p mature miRNA
• Sequence: 37 - CGUUAUAAAAGACCACUGUGCAAA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250