Stem-loop dsi-mir-975

Accession

MI0011772

Description

Drosophila simulans dsi-mir-975 precursor miRNA

Sequence

ucggaagugcaauauugaguuuuugauuuUAAACACUGCCUACAUCCUGUAUguguuuugcauccgaUACAGUUGUAGGAGUCGUUUGCagucagagauuucacagacugcgaggaucga
((((...((((....(((((((((((((.((((((((.((((((..((((((((((...))))...)))))).))))))))).))))).))))))))).)))).....))))....))))

Structure

    -aag    -auau    -         u     -   G      UC      ---    u 
ucgg    ugca     ugag uuuuugauu UAAAC ACU CCUACA  CUGUAU   gugu  
||||    ||||     |||| ||||||||| ||||| ||| ||||||  ||||||   |||| u
agcu    gcgu     acuu agagacuga GUUUG UGA GGAUGU  GACAUa   uacg  
    agga    cagac    u         C     C   -      -U      gcc    u 

Annotation confidence Not enough data

Genome context

chrX: 15018370-15018489 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-975

Mature dsi-miR-975-5p

• Accession: MIMAT0012501
• Description: Drosophila simulans dsi-miR-975-5p mature miRNA
• Sequence: 30 - UAAACACUGCCUACAUCCUGUAU - 52
• Evidence: experimental ; Illumina [1-2]

Mature dsi-miR-975-3p

• Accession: MIMAT0037356
• Description: Drosophila simulans dsi-miR-975-3p mature miRNA
• Sequence: 68 - UACAGUUGUAGGAGUCGUUUGC - 89
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250