Stem-loop dvi-mir-973

Accession

MI0029263

Description

Drosophila virilis dvi-mir-973 precursor miRNA

Sequence

11108 reads, 34.0 reads per million, 37 experiments

ucggacauucacuuuuCGUGUUCGAUGUUUGAACUUGGAUuuuuuuuauauacacaaaUCUGUUCAUUCCUCGACACUAGaaguuugcgucaaua
...(((....((((((.((((.(((.(..(((((..((((((.............)))))))))))..).))))))).))))))....)))....

Structure

-ucg   auuc      C    U   U UU     UU      uuuuu 
    gac    acuuuu GUGU CGA G  UGAAC  GGAUuu     a
    |||    |||||| |||| ||| |  |||||  ||||||     u
    cug    ugaaGA CACA GCU C  ACUUG  UCUaaa     a
auaa   cguu      U    -   C UU     --      cacau 

Annotation confidence High

Genome context

scaffold_13042: 918343-918437 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-973

Mature dvi-miR-973-5p

• Accession: MIMAT0037534
• Description: Drosophila virilis dvi-miR-973-5p mature miRNA
• Sequence: 17 - CGUGUUCGAUGUUUGAACUUGGAU - 40
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-973-3p

• Accession: MIMAT0035593
• Description: Drosophila virilis dvi-miR-973-3p mature miRNA
• Sequence: 59 - UCUGUUCAUUCCUCGACACUAG - 80
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250