miRBase entry: dvi-mir-9700a

Stem-loop dvi-mir-9700a

Accession

MI0030944

Description

Drosophila virilis dvi-mir-9700a precursor miRNA

Sequence

AAGCACAAUCAAUAGACAAUAUguuguaaguaaacaauAUUGUCUAAUGUUUAUGCGUCAg
..(((.((.((.(((((((((((((.......))).)))))))))).)).)).))).....

Structure

---AA   C  U  A          -   gu 
     GCA AA CA UAGACAAUAU guu  a
     ||| || || |||||||||| |||  a
     CGU UU GU AUCUGUUAua caa  g
gACUG   A  U  A          a   au

Annotation confidence Not enough data

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Genome context

scaffold_12855: 6284216-6284276 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9700a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9700a-5p

Accession	MIMAT0039246
Description	Drosophila virilis dvi-miR-9700a-5p mature miRNA
Sequence	1 - AAGCACAAUCAAUAGACAAUAU - 22
Evidence	experimental Illumina [1]

Mature dvi-miR-9700a-3p

Accession	MIMAT0039247
Description	Drosophila virilis dvi-miR-9700a-3p mature miRNA
Sequence	39 - AUUGUCUAAUGUUUAUGCGUCA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250