miRBase entry: dse-mir-4966-2

Stem-loop dse-mir-4966-2

Accession

MI0030882

Description

Drosophila sechellia dse-mir-4966-2 precursor miRNA

Sequence

auguauuguuaugcgaaggauacuauauacuugucgacacuggcgUACUAAAUAUAUUGCACAUGUUcauacauuuucauacaUGUAAAACAUAUUUAGAACUCAaguaccgaaaaaugaacaucgaaacgggagaacacgaacaucaugcuac
..(((((.((.....)).))))).................((((((.((((((((.((..((((((..............))))))..)).))))))))..(((..((..(((..........)))..))..)))............)))))).

Structure

auguauuguuaugcgaaggauacuauauacuugucgacac      -----------------------------------------------A        A  GC      Ucauac 
                                        uggcgU                                                CUAAAUAU UU  ACAUGU      a
                                        ||||||                                                |||||||| ||  ||||||       
                                        aucgua                                                GAUUUAUA AA  UGUaca      u
---------------------------------------c      cuacaagcacaagagggcaaagcuacaaguaaaaagccaugaACUCAA        C  AA      uacuuu

Annotation confidence Not enough data

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Genome context

scaffold_8: 1734810-1734963 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-4966-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-4966-5p

Accession	MIMAT0039144
Description	Drosophila sechellia dse-miR-4966-5p mature miRNA
Sequence	46 - UACUAAAUAUAUUGCACAUGUU - 67
Evidence	experimental Illumina [1]

Mature dse-miR-4966-2-3p

Accession	MIMAT0039146
Description	Drosophila sechellia dse-miR-4966-2-3p mature miRNA
Sequence	84 - UGUAAAACAUAUUUAGAACUCA - 105
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250