Stem-loop dse-mir-4966-2

Accession

MI0030882

Description

Drosophila sechellia dse-mir-4966-2 precursor miRNA

Sequence

auguauuguuaugcgaaggauacuauauacuugucgacacuggcgUACUAAAUAUAUUGCACAUGUUcauacauuuucauacaUGUAAAACAUAUUUAGAACUCAaguaccgaaaaaugaacaucgaaacgggagaacacgaacaucaugcuac
..(((((.((.....)).))))).................((((((.((((((((.((..((((((..............))))))..)).))))))))..(((..((..(((..........)))..))..)))............)))))).

Structure

auguauuguuaugcgaaggauacuauauacuugucgacac      -----------------------------------------------A        A  GC      Ucauac 
                                        uggcgU                                                CUAAAUAU UU  ACAUGU      a
                                        ||||||                                                |||||||| ||  ||||||       
                                        aucgua                                                GAUUUAUA AA  UGUaca      u
---------------------------------------c      cuacaagcacaagagggcaaagcuacaaguaaaaagccaugaACUCAA        C  AA      uacuuu 

Annotation confidence Low

Genome context

scaffold_8: 1734810-1734963 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-4966-2

Mature dse-miR-4966-5p

• Accession: MIMAT0039144
• Description: Drosophila sechellia dse-miR-4966-5p mature miRNA
• Sequence: 46 - UACUAAAUAUAUUGCACAUGUU - 67
• Evidence: experimental ; Illumina [1]

Mature dse-miR-4966-2-3p

• Accession: MIMAT0039146
• Description: Drosophila sechellia dse-miR-4966-2-3p mature miRNA
• Sequence: 84 - UGUAAAACAUAUUUAGAACUCA - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250