miRBase entry: der-mir-9683

Stem-loop der-mir-9683

Accession

MI0030931

Description

Drosophila erecta der-mir-9683 precursor miRNA

Sequence

AUUCUUAUUCGGUCCGCUUCUGcaaaguuuuuauuGCAGCGUGUCAAAUGAGAAAGUu
.((((((((.((..(((..((((((........)))))).))))).))))))))....

Structure

---A        C  UC   UU      agu 
    UUCUUAUU GG  CGC  CUGcaa   u
    |||||||| ||  |||  ||||||    
    AAGAGUAA CU  GUG  GACGuu   u
uUGA        A  --   -C      auu

Annotation confidence Not enough data

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Genome context

scaffold_4690: 9672360-9672417 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-9683

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-9683-5p

Accession	MIMAT0039220
Description	Drosophila erecta der-miR-9683-5p mature miRNA
Sequence	1 - AUUCUUAUUCGGUCCGCUUCUG - 22
Evidence	experimental Illumina [1]

Mature der-miR-9683-3p

Accession	MIMAT0039221
Description	Drosophila erecta der-miR-9683-3p mature miRNA
Sequence	36 - GCAGCGUGUCAAAUGAGAAAGU - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250