Stem-loop der-mir-311b-1

Accession

MI0009060

Description

Drosophila erecta der-mir-311b-1 precursor miRNA

Sequence

60351 reads, 502.0 reads per million, 19 experiments

caauuuuCGGCUGUGGAGUGGGCUAGUACUgugauuuuaacauugagUAUUGCACAUUCCCCAGCCUGaaagugu
..(((((((((((.((((((.((.(((((((((.......)))..)))))))).)))))).))))).))))))..

Structure

ca      -     U      G  U      --   au 
  auuuuC GGCUG GGAGUG GC AGUACU  gug  u
  |||||| ||||| |||||| || ||||||  |||  u
  ugaaaG CCGAC CCUUAC CG UUAUga  uac  u
ug      U     C      A  -      gu   aa 

Annotation confidence High

Genome context

scaffold_4845: 10616837-10616911 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from der-mir-311b-1

Mature der-miR-311b-5p

• Accession: MIMAT0037338
• Description: Drosophila erecta der-miR-311b-5p mature miRNA
• Sequence: 8 - CGGCUGUGGAGUGGGCUAGUACU - 30
• Evidence: experimental ; Illumina [2]

Mature der-miR-311b-3p

• Accession: MIMAT0008520
• Description: Drosophila erecta der-miR-311b-3p mature miRNA
• Sequence: 48 - UAUUGCACAUUCCCCAGCCUG - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250