miRBase entry: der-mir-311b-1

Stem-loop der-mir-311b-1

Accession

MI0009060

Description

Drosophila erecta der-mir-311b-1 precursor miRNA

Sequence

caauuuuCGGCUGUGGAGUGGGCUAGUacugugauuuuaacauugagUAUUGCACAUUCCCCAGCCUGAaagugu
..(((((((((((.((((((.((.(((((((((.......)))..)))))))).)))))).))))).))))))..

Structure

ca      -     U      G  U      --   au 
  auuuuC GGCUG GGAGUG GC AGUacu  gug  u
  |||||| ||||| |||||| || ||||||  |||  u
  ugaaAG CCGAC CCUUAC CG UUAUga  uac  u
ug      U     C      A  -      gu   aa

Annotation confidence Not enough data

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Genome context

scaffold_4845: 10616837-10616911 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from der-mir-311b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-311b-3p

Accession	MIMAT0008520
Description	Drosophila erecta der-miR-311b-3p mature miRNA
Sequence	48 - UAUUGCACAUUCCCCAGCCUGA - 69
Evidence	experimental Illumina [2]

Mature der-miR-311b-5p

Accession	MIMAT0037338
Description	Drosophila erecta der-miR-311b-5p mature miRNA
Sequence	8 - CGGCUGUGGAGUGGGCUAGU - 27
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250