Stem-loop der-mir-310b

Accession

MI0009024

Description

Drosophila erecta der-mir-310b precursor miRNA

Sequence

acacaaauauuugcAGGACGGGUCGUGUGUUAAUGuauaaaucuauuagcuaUAUUGCACACUUCCCGCUCUUUaaauguccaguguu
((((..(((((((.((((((((..((((((.((((((.............))))))))))))..)))).)))))))))))...)))).

Structure

-    -aa       c    -    UC      U      uaaau 
 acac   auauuug AGGA CGGG  GUGUGU AAUGua     c
 ||||   ||||||| |||| ||||  |||||| ||||||     u
 ugug   uguaaaU UUCU GCCC  CACACG UUAUau     a
u    acc       -    C    UU      -      cgauu 

Annotation confidence Not enough data

Genome context

scaffold_4845: 10617892-10617979 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from der-mir-310b

Mature der-miR-310b-3p

• Accession: MIMAT0008485
• Description: Drosophila erecta der-miR-310b-3p mature miRNA
• Sequence: 53 - UAUUGCACACUUCCCGCUCUUU - 74
• Evidence: experimental ; Illumina [2]

Mature der-miR-310b-5p

• Accession: MIMAT0037336
• Description: Drosophila erecta der-miR-310b-5p mature miRNA
• Sequence: 15 - AGGACGGGUCGUGUGUUAAUG - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250