Stem-loop dsi-mir-310

Accession

MI0009406

Description

Drosophila simulans dsi-mir-310 precursor miRNA

Sequence

aacauaaacauuugcAGGACGGGUCGUGUGUCAGUauauuuacuucuuagcuaUAUUGCACACUUCCCGGCCUUUaaauguccaauguu
(((((..(((((((.(((.((((..(((((.(((((((.(((.....))).))))))))))))..)))).))).)))))))...)))))

Structure

     -aa       c   A    UC     U       u   c 
aacau   acauuug AGG CGGG  GUGUG CAGUaua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau gau c
     acc       U   G    UU     -       c   u 

Annotation confidence Not enough data

Genome context

chr2R: 15132557-15132645 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from dsi-mir-310

Mature dsi-miR-310-3p

• Accession: MIMAT0008841
• Description: Drosophila simulans dsi-miR-310-3p mature miRNA
• Sequence: 54 - UAUUGCACACUUCCCGGCCUUU - 75
• Evidence: experimental ; Illumina [2]

Mature dsi-miR-310-5p

• Accession: MIMAT0037346
• Description: Drosophila simulans dsi-miR-310-5p mature miRNA
• Sequence: 16 - AGGACGGGUCGUGUGUCAGU - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250