miRBase entry: dsi-mir-310

Stem-loop dsi-mir-310

Accession

MI0009406

Description

Drosophila simulans dsi-mir-310 precursor miRNA

Sequence

aacauaaacauuugcAGGACGGGUCGUGUGUCAGUauauuuacuucuuagcuaUAUUGCACACUUCCCGGCCUUUaaauguccaauguu
(((((..(((((((.(((.((((..(((((.(((((((.(((.....))).))))))))))))..)))).))).)))))))...)))))

Structure

     -aa       c   A    UC     U       u   c 
aacau   acauuug AGG CGGG  GUGUG CAGUaua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau gau c
     acc       U   G    UU     -       c   u

Annotation confidence Not enough data

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Genome context

chr2R: 15132557-15132645 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from dsi-mir-310

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-310-3p

Accession	MIMAT0008841
Description	Drosophila simulans dsi-miR-310-3p mature miRNA
Sequence	54 - UAUUGCACACUUCCCGGCCUUU - 75
Evidence	experimental Illumina [2]

Mature dsi-miR-310-5p

Accession	MIMAT0037346
Description	Drosophila simulans dsi-miR-310-5p mature miRNA
Sequence	16 - AGGACGGGUCGUGUGUCAGU - 35
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250