miRBase entry: dse-mir-311

Stem-loop dse-mir-311

Accession

MI0009361

Description

Drosophila sechellia dse-mir-311 precursor miRNA

Sequence

ucuagauaauuuuuCGGACGGUAUAUGAGUCAAUGUUuucuuuuucgaauaUAUUGCACAUUCACCGGCCUGAaaauaucaaga
(((.((((..(((((((.((((..(((.(.((((((.(((......))).))))))).)))..))))..))))))))))).)))

Structure

   a    au       -A    AU   A U      U   uu 
ucu gaua  uuuuCGG  CGGU  AUG G CAAUGU uuc  u
||| ||||  |||||||  ||||  ||| | |||||| |||   
aga cuau  aaaAGUC  GCCA  UAC C GUUAUa aag  u
   a    --       CG    CU   A -      u   cu

Annotation confidence Not enough data

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Genome context

scaffold_1: 14025606-14025689 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-311

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-311-3p

Accession	MIMAT0008799
Description	Drosophila sechellia dse-miR-311-3p mature miRNA
Sequence	52 - UAUUGCACAUUCACCGGCCUGA - 73
Evidence	experimental Illumina [2]

Mature dse-miR-311-5p

Accession	MIMAT0037343
Description	Drosophila sechellia dse-miR-311-5p mature miRNA
Sequence	15 - CGGACGGUAUAUGAGUCAAUGUU - 37
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250