Stem-loop dvi-mir-9547

Accession

MI0029285

Description

Drosophila virilis dvi-mir-9547 precursor miRNA

Sequence

ucaagaggCGAGAUUUCGUUUGAGUGCACUUucgcauucacuuaaaAUGUAUUCAUUCGAGAUCUGGACuauuuu
......(((.((((((((..((((((((.(((...........))).))))))))..)))))))).).)).....

Structure

ucaaga  - G        UU        C   cgca 
      gg C AGAUUUCG  UGAGUGCA UUu    u
      || | ||||||||  |||||||| |||    u
      uC G UCUAGAGC  ACUUAUGU aaa    c
-uuuua  A G        UU        A   uuca 

Annotation confidence Low

Genome context

scaffold_13042: 917881-917955 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-9547

Mature dvi-miR-9547-5p

• Accession: MIMAT0035634
• Description: Drosophila virilis dvi-miR-9547-5p mature miRNA
• Sequence: 9 - CGAGAUUUCGUUUGAGUGCACUU - 31
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-9547-3p

• Accession: MIMAT0035635
• Description: Drosophila virilis dvi-miR-9547-3p mature miRNA
• Sequence: 47 - AUGUAUUCAUUCGAGAUCUGGAC - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250