Stem-loop der-bantam

Accession

MI0009074

Description

Drosophila erecta der-bantam precursor miRNA

Literature search

3 open access papers mention der-bantam
(8 sentences)

Sequence

5231051 reads, 20717.0 reads per million, 19 experiments

auuugacuacgaaaCCGGUUUUCGAUUUGGUUUGACUguuuuucauacaagUGAGAUCAUUUUGAAAGCUGAUUuugucaa
........((((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))...

Structure

auuugacu      C          UU      G   -  uu 
        acgaaa CGGUUUUCGA  UGGUUU ACU gu  u
        |||||| ||||||||||  |||||| ||| ||  u
        uguuUU GUCGAAAGUU  ACUAGA Uga ca  c
-----aac      A          UU      G   a  ua 

Annotation confidence High

Genome context

scaffold_4784: 648344-648424 [+]

Mature der-bantam-5p

• Accession: MIMAT0053331
• Description: Drosophila erecta der-bantam-5p mature miRNA
• Sequence: 15 - CCGGUUUUCGAUUUGGUUUGACU - 37
• Evidence: not_experimental

Mature der-bantam-3p

• Accession: MIMAT0008533
• Description: Drosophila erecta der-bantam-3p mature miRNA
• Sequence: 52 - UGAGAUCAUUUUGAAAGCUGAUU - 74
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218