Stem-loop dvi-mir-975

Accession

MI0029292

Description

Drosophila virilis dvi-mir-975 precursor miRNA

Sequence

uauggucuuugauuUUAGAUACUCCCUAUAUCCAGUaugugugccacuuauugaaauACAAGAUGUAUGGGGUGUCUgcaaucacaaaccacgua
..((((...(((((.((((((((((.(((((((((((.(((...))).)))))........)))))).)))))))))).)))))...))))....

Structure

--ua    cuu     U          C      --------     u   u 
    uggu   ugauu UAGAUACUCC UAUAUC        CAGUa gug  
    ||||   ||||| |||||||||| ||||||        ||||| ||| g
    acca   acuaa gUCUGUGGGG AUGUAG        guuau cac  
augc    aac     c          U      AACAuaaa     u   c 

Annotation confidence Low

Genome context

scaffold_13042: 906914-907008 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from dvi-mir-975

Mature dvi-miR-975-5p

• Accession: MIMAT0035647
• Description: Drosophila virilis dvi-miR-975-5p mature miRNA
• Sequence: 15 - UUAGAUACUCCCUAUAUCCAGU - 36
• Evidence: experimental ; Illumina [1-2]

Mature dvi-miR-975-3p

• Accession: MIMAT0035648
• Description: Drosophila virilis dvi-miR-975-3p mature miRNA
• Sequence: 58 - ACAAGAUGUAUGGGGUGUCU - 77
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250