Stem-loop der-mir-975

Accession

MI0030925

Description

Drosophila erecta der-mir-975 precursor miRNA

Sequence

24854 reads, 373.0 reads per million, 16 experiments

uugaauucuugacuUUAAACACUUCCUACAUCCUGUAUGuguuuugcgcccuauaCAGAUGUGGGGGUCGUUUGCACUcagggauuccaca
..((((((((((...((((((((.((((((((.(((((((((...))))...)))))))))))))))).)))))...))))))))))....

Structure

--uu          cuU     -   U        C     ---    u 
    gaauucuuga   UAAAC ACU CCUACAUC UGUAU   Gugu  
    ||||||||||   ||||| ||| |||||||| |||||   |||| u
    cuuagggacU   GUUUG UGG GGGUGUAG ACaua   cgcg  
acac          CAC     C   -        -     ucc    u 

Annotation confidence High

Genome context

scaffold_4690: 9688771-9688861 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from der-mir-975

Mature der-miR-975-5p

• Accession: MIMAT0039208
• Description: Drosophila erecta der-miR-975-5p mature miRNA
• Sequence: 15 - UUAAACACUUCCUACAUCCUGUAUG - 39
• Evidence: experimental ; Illumina [1]

Mature der-miR-975-3p

• Accession: MIMAT0039209
• Description: Drosophila erecta der-miR-975-3p mature miRNA
• Sequence: 56 - CAGAUGUGGGGGUCGUUUGCACU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250