Stem-loop dse-mir-974

Accession

MI0030886

Description

Drosophila sechellia dse-mir-974 precursor miRNA

Sequence

3484 reads, 1097.0 reads per million, 1 experiments

AAGCGAGCAAAGAAGUAGUAUUUGcguuuccaagaacaaaUAUAACUUCUUUGAAAGCUAGGU
.(((...(((((((((.(((((((............))))))).)))))))))...)))....

Structure

---A   GAG         A       cguuu 
    AGC   CAAAGAAGU GUAUUUG     c
    |||   ||||||||| |||||||      
    UCG   GUUUCUUCA UAUaaac     c
UGGA   AAA         A       aagaa 

Annotation confidence High

Genome context

scaffold_8: 1728136-1728198 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from dse-mir-974

Mature dse-miR-974-5p

• Accession: MIMAT0039149
• Description: Drosophila sechellia dse-miR-974-5p mature miRNA
• Sequence: 1 - AAGCGAGCAAAGAAGUAGUAUUUG - 24
• Evidence: experimental ; Illumina [1]

Mature dse-miR-974-3p

• Accession: MIMAT0039150
• Description: Drosophila sechellia dse-miR-974-3p mature miRNA
• Sequence: 41 - UAUAACUUCUUUGAAAGCUAGGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250