miRBase entry: dse-mir-313

Stem-loop dse-mir-313

Accession

MI0009394

Description

Drosophila sechellia dse-mir-313 precursor miRNA

Sequence

uucUGCUGCGCAUUGGGGCACUACUGuuuuuuuuuaauugagUAUUGCACUUUUCACAGCCUUAaa
....((((.(....((((((.((((...............)))).))).)))..).))))......

Structure

--uucU    C CAUU   -   C    Guuuuu 
      GCUG G    GGG GCA UACU      u
      |||| |    ||| ||| ||||      u
      CGAC C    UUC CGU AUga      u
aaAUUC    A --UU   A   U    guuaau

Annotation confidence Not enough data

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Genome context

scaffold_1: 14025902-14025967 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-313

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-313-3p

Accession	MIMAT0008831
Description	Drosophila sechellia dse-miR-313-3p mature miRNA
Sequence	43 - UAUUGCACUUUUCACAGCCUUA - 64
Evidence	experimental Illumina [2]

Mature dse-miR-313-5p

Accession	MIMAT0037345
Description	Drosophila sechellia dse-miR-313-5p mature miRNA
Sequence	4 - UGCUGCGCAUUGGGGCACUACUG - 26
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250